Cell_BLAST
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Cell_BLAST
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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Q
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R
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S
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T
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W
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Z
A
AdaptiveMNNAdversarial (class in Cell_BLAST.rmbatch)
Adversarial (class in Cell_BLAST.rmbatch)
align() (Cell_BLAST.blast.BLAST method)
align_DIRECTi() (in module Cell_BLAST.directi)
amd() (in module Cell_BLAST.blast)
annotate() (Cell_BLAST.blast.Hits method)
annotation_confidence() (in module Cell_BLAST.data)
B
batch_effect_list (Cell_BLAST.directi.DIRECTi attribute)
BLAST (class in Cell_BLAST.blast)
blast2co() (Cell_BLAST.blast.Hits method)
C
CatGau (class in Cell_BLAST.latent)
Cell_BLAST.blast
module
Cell_BLAST.data
module
Cell_BLAST.directi
module
Cell_BLAST.latent
module
Cell_BLAST.prob
module
Cell_BLAST.rmbatch
module
clustering() (Cell_BLAST.directi.DIRECTi method)
compute_libsize() (in module Cell_BLAST.data)
D
Dataset (class in Cell_BLAST.data)
DIRECTi (class in Cell_BLAST.directi)
E
ed() (in module Cell_BLAST.blast)
F
filter() (Cell_BLAST.blast.Hits method)
find_variable_genes() (in module Cell_BLAST.data)
fit_DIRECTi() (in module Cell_BLAST.directi)
forward() (Cell_BLAST.latent.CatGau method)
(Cell_BLAST.latent.Gau method)
(Cell_BLAST.latent.Regularizer method)
(Cell_BLAST.latent.SemiSupervisedCatGau method)
(Cell_BLAST.prob.LN method)
(Cell_BLAST.prob.NB method)
(Cell_BLAST.prob.ZILN method)
(Cell_BLAST.prob.ZINB method)
(Cell_BLAST.rmbatch.Adversarial method)
(Cell_BLAST.rmbatch.RMBatch method)
G
Gau (class in Cell_BLAST.latent)
gene_grad() (Cell_BLAST.directi.DIRECTi method)
gene_gradient() (Cell_BLAST.blast.Hits method)
genes (Cell_BLAST.directi.DIRECTi attribute)
H
Hits (class in Cell_BLAST.blast)
I
inference() (Cell_BLAST.directi.DIRECTi method)
L
Latent (class in Cell_BLAST.latent)
LN (class in Cell_BLAST.prob)
load() (Cell_BLAST.blast.BLAST class method)
(Cell_BLAST.directi.DIRECTi class method)
M
map_vars() (in module Cell_BLAST.data)
md() (in module Cell_BLAST.blast)
MNN (class in Cell_BLAST.rmbatch)
MNNAdversarial (class in Cell_BLAST.rmbatch)
module
Cell_BLAST.blast
Cell_BLAST.data
Cell_BLAST.directi
Cell_BLAST.latent
Cell_BLAST.prob
Cell_BLAST.rmbatch
MSE (class in Cell_BLAST.prob)
N
NB (class in Cell_BLAST.prob)
normalize() (in module Cell_BLAST.data)
npd_v1() (in module Cell_BLAST.blast)
npd_v2() (in module Cell_BLAST.blast)
P
ProbModel (class in Cell_BLAST.prob)
Q
query() (Cell_BLAST.blast.BLAST method)
R
read_table() (in module Cell_BLAST.data)
reconcile_models() (Cell_BLAST.blast.Hits method)
Regularizer (class in Cell_BLAST.latent)
RMBatch (class in Cell_BLAST.rmbatch)
S
sankey() (in module Cell_BLAST.blast)
save() (Cell_BLAST.blast.BLAST method)
(Cell_BLAST.directi.DIRECTi method)
select_vars() (in module Cell_BLAST.data)
SemiSupervisedCatGau (class in Cell_BLAST.latent)
T
to_data_frames() (Cell_BLAST.blast.Hits method)
W
write_table() (in module Cell_BLAST.data)
Z
ZILN (class in Cell_BLAST.prob)
ZINB (class in Cell_BLAST.prob)
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