Quick Start

In this section, we assume that you have successfully installed the Cell_BLAST package. If you haven’t, please refer to Installation Guide

Vignettes

We provide the following two ipython notebooks to help you start using Cell_BLAST and DIRECTi.

• DIRECTi tutorial
  • Load data
  • Gene selection
  • Unsupervised dimension reduction
  • Batch effect correction
• Cell BLAST tutorial
  • Preparing database
  • Querying

Selected Documentations

• Cell_BLAST.directi.fit_DIRECTi()

• Cell_BLAST.blast.BLAST